'(r-expressions (r-call library \M\A\S\S) (r-call dyn.load "starp.so") (<- ppcommand (function ((*named* ... *r-missing*)) (r-call .\Call "ppcommand" (r-call list r-dotdotdot)) ())) (<- ppvcommand (function ((*named* va *r-missing*)) (r-call .\Call "ppcommand" va) ())) (<- ppinvoke ppcommand) (<- pploadconfig (function ((*named* fileName *r-missing*)) (r-call .\Call "pploadconfig" file\Name) ())) (<- ppconnect (function ((*named* numProcs ()) (*named* machines ())) (r-call .\Call "ppconnect" (r-call list num\Procs machines)) ())) (<- ppgetlogpath (function () (r-call .\Call "ppgetlogpath") ())) (<- ppgetlog (function () (r-call .\Call "ppgetlog") ())) (<- ppshowdashboard (function () (r-call .\Call "ppshowdashboard") ())) (<- pphidedashboard (function () (r-call .\Call "pphidedashboard") ())) (<- revealargs (function ((*named* dots *r-missing*)) (r-call .\Call "_revealArgs" dots) ())) (<- listargs (function ((*named* ... *r-missing*)) (r-call revealargs (r-call get "...")) ())) (<- ppping (function () (r-call ppcommand "ppping") ())) (<- ppver (function () (r-call ppcommand "pp_ver") ())) (<- \S\T\A\R\P\D\I\S\T "../../../linkdist") (<- \S\T\A\R\P\P\L\A\T\F\O\R\M "ia32_linux") (r-call .\Call "_setstarpdist" \S\T\A\R\P\D\I\S\T) (r-call .\Call "_setstarpplat" \S\T\A\R\P\P\L\A\T\F\O\R\M) (r-call pploadconfig (r-call paste \S\T\A\R\P\D\I\S\T "/config/starpd.properties" (*named* sep ""))) (<- dimdis (function ((*named* v *r-missing*)) (r-block (if (r-call == (r-call r-index (r-call class v) 1) "dlayoutn") (return (r-call as.numeric (r-call r-index (r-call class v) 2)))) (if (r-call ! 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(r-call is.darray da)) (return da)) (if (r-call == (r-call length ($ da shape)) 2) (r-block (<- l (r-call ppcommand "ppdense_ppfront" da)) (if ($ da logical) (<- m (r-call as.logical (r-call r-aref l 1))) (<- m (r-call r-aref l 1))) (<- (r-call dim m) (r-call c (r-call r-aref l 2) (r-call r-aref l 3)))) (r-block (<- m (r-call ppcommand "ppdensend_ppfront" da)) (if ($ da logical) (<- m (r-call as.logical m))) (<- (r-call dim m) (r-call as.vector ($ da shape))))) m) ())) (<- vector (function ((*named* mode "logical") (*named* length 0)) (r-call \Use\Method "vector" length) ())) (<- vector.default (r-call .\Primitive "vector")) (<- vector.dlayout (function ((*named* mode "logical") (*named* length 0)) (r-block (<- d (r-call ppzeros (r-call c 1 length))) (if (r-call == mode "logical") (<- ($ d logical) *r-true*)) d) ())) (<- double (function ((*named* length 0)) (r-call vector "double" length) ())) (<- logical (function ((*named* length 0)) (r-call vector "logical" length) ())) (<- c (function ((*named* ... *r-missing*)) (r-block (<- args (r-call list r-dotdotdot)) (<- v (r-call (r-call .\Primitive "c") r-dotdotdot)) (<- l (r-call length args)) (if (r-call == l 0) (return v)) (for i (r-call : 1 l) (if (r-call is.dlayout (r-call r-aref args i)) (r-block (<- (r-call class v) (r-call append "dlayoutn" (r-call to\String i) (r-call class v))) (return v)))) v) ())) (<- rep (function ((*named* x *r-missing*) (*named* times 1) (*named* length.out \N\A) (*named* each 1)) (r-block (if (r-call is.darray x) (r-block (<- (r-call dim x) (r-call c 1 (r-call length x))) (if (\|\| (&& (missing length.out) (r-call > (r-call length times) 1)) (r-call > each 1)) (<- x (r-call ppfront x)))) (if (r-call ! 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(r-call is.scalar rhs)) (r-call stop "expected scalar value")) (r-call ppcommand "ppdense_setelement" d r c rhs)) (if (r-call is.colon r) (r-block (if (r-call is.darray c) (r-block (if (r-call is.scalar rhs) (r-call ppcommand "ppdense_subsasgn_dcol_s" d c rhs) (r-call ppcommand "ppdense_subsasgn_dcol" d c rhs))) (r-block (if (r-call is.scalar rhs) (r-call ppcommand "ppdense_subsasgn_col_s" d (r-call as.real2d c) rhs) (r-call ppcommand "ppdense_subsasgn_col" d (r-call as.real2d c) rhs))))) (if (r-call is.colon c) (r-block (if (r-call is.darray r) (r-block (if (r-call is.scalar rhs) (r-call ppcommand "ppdense_subsasgn_drow_s" d r rhs) (r-call ppcommand "ppdense_subsasgn_drow" d r rhs))) (r-block (if (r-call is.scalar rhs) (r-call ppcommand "ppdense_subsasgn_row_s" d (r-call as.real2d r) rhs) (r-call ppcommand "ppdense_subsasgn_row" d (r-call as.real2d r) rhs))))) (r-block (if (r-call ! (r-call is.darray r)) (<- r (r-call as.realarray r))) (if (r-call ! (r-call is.darray c)) (<- c (r-call as.realarray c))) (if (r-call is.scalar rhs) (r-call ppcommand "ppdense_subsasgn_rowcol_s" d r c rhs) (r-call ppcommand "ppdense_subsasgn_rowcol" d r c rhs))))))))) (return d)) (r-block (if (r-call == n 3) (r-call ppcommand "ppdensend_subsasgn_idx" d (r-call ppback (r-call as.2d (r-call r-aref idxs 1))) rhs) (if (r-call all (r-call lapply idxs is.scalar)) (r-block (r-call ppcommand "ppdensend_subsasgn_scalar" d (r-call as.numeric idxs) rhs)) (if (r-call == (r-call sum whichcolons) (r-call - (r-call length (r-call dim d)) 1)) (r-block (<- slice (r-call as.realarray (r-call r-aref (r-call r-index idxs (r-call ! whichcolons)) 1))) (<- slicepos (r-call r-index (r-call : 1 (r-call length idxs)) (r-call ! whichcolons))) (r-call ppcommand "ppdensend_subsasgn_slice" d (r-call - slicepos 1) slice rhs)) (r-block (<- idxs (r-call lapply idxs (function ((*named* i *r-missing*)) (if (r-call is.colon i) (r-call - 1) (r-call as.realarray i)) ()))) (<- al (r-call append "ppdensend_subsasgn_tuple" (r-call append 0 (r-call append idxs 0)))) (<- (r-call r-aref al 2) d) (<- (r-call r-aref al (r-call length al)) rhs) (r-call ppvcommand al))))))) d) ())) (<- unaryops (r-call list (r-call list "ceiling" 9 "ceil") (r-call list "round" 10) (r-call list "floor" 11) (r-call list "sign" 14) (r-call list "abs" 15) (r-call list "sqrt" 16 *r-false*) (r-call list "exp" 17) (r-call list "log10" 19) (r-call list "log2" 20) (r-call list "Conj" 8 *r-false*) (r-call list "sin" 21) (r-call list "cos" 22) (r-call list "tan" 23))) (<- mkunaryop (function ((*named* code *r-missing*) (*named* oldf *r-missing*) (*named* ndname *r-missing*)) (r-block (r-call force code) (r-call force oldf) (if (r-call is.character ndname) (r-block (<- ndname (r-call paste "ppdensend_" ndname (*named* sep ""))) (function ((*named* x *r-missing*)) (r-block (if (r-call is.darray x) (r-block (if (r-call == (r-call length ($ x shape)) 2) (r-call ppcommand "ppdense_unary_op" code x) (r-call ppcommand ndname x))) (r-call oldf x))) ())) (r-block (function ((*named* x *r-missing*)) (r-block (if (r-call is.darray x) (r-call ppcommand "ppdense_unary_op" code x) (r-call oldf x))) ())))) ())) (for i unaryops (r-block (<- ppname (r-call as.name (r-call r-aref i 1))) (<- \Rf (r-call eval ppname)) (if (r-call == (r-call length i) 2) (<- ndn (r-call r-aref i 1)) (<- ndn (r-call r-aref i 3))) (r-call assign (r-call as.character ppname) (r-call mkunaryop (r-call r-aref i 2) \Rf ndn) (*named* envir (r-call globalenv))))) (r-call redefining chol) (<- chol (function ((*named* m *r-missing*)) (r-block (if (r-call is.darray m) (r-block (<- l (r-call ppcommand "ppscalapack_chol" m)) (if (r-call > (r-call r-aref l 1) 0) (r-call stop "chol: not positive definite.")) (return (r-call r-aref l 2)))) (r-call \Rchol m)) ())) (r-call redefining ginv) (<- ginv (function ((*named* m *r-missing*)) (r-block (if (r-call is.darray m) (r-block (<- l (r-call ppcommand "ppscalapack_inv" m)) (return (r-call r-aref l 1)))) (r-call \Rginv m)) ())) (r-call redefining eigen) (<- eigen (function ((*named* x *r-missing*) (*named* symmetric *r-missing*) (*named* only.values *r-false*) (*named* EISPACK *r-false*)) (r-block (if (r-call ! (r-call is.darray x)) (return (r-call \Reigen x symmetric only.values \E\I\S\P\A\C\K))) (if only.values (<- vl 0) (<- vl 1)) (if (&& (r-call ! (missing symmetric)) symmetric) (r-block (<- res (r-call ppcommand "ppscalapack_eig_sym" x vl))) (r-block (<- res (r-call ppcommand "ppscalapack_eig" x vl)))) (<- out (r-call list (*named* values ()) (*named* vectors ()))) (if only.values (r-block (<- ($ out values) (r-call t res))) (r-block (if (&& (r-call ! (missing symmetric)) symmetric) (r-block (<- ($ out values) (r-call t (r-call r-aref res 2)))) (r-block (<- ($ out values) (r-call diag (r-call r-aref res 2))))) (<- ($ out vectors) (r-call r-aref res 1)))) out) ())) (r-call redefining apply) (<- apply (function ((*named* d *r-missing*) (*named* axis *r-missing*) (*named* f *r-missing*)) (r-block (if (r-call ! (r-call is.darray d)) (return (r-call \Rapply d axis f))) (<- axis (r-call + axis 1)) (if (r-call identical f sum) (r-call t (r-call ppcommand "ppdense_sum" d axis)) (r-call stop "starp: unsupported operation"))) ())) (r-call redefining diag<-) (<- diag<- (function ((*named* d *r-missing*) (*named* value *r-missing*)) (r-block (if (r-call ! (r-call is.darray d)) (r-block (if (r-call is.darray value) (<- value (r-call ppfront value))) (return (r-call \Rdiag<- d value)))) (if (r-call != (r-call length (r-call dim d)) 2) (r-call stop "starp diag<-: only supported for 2d")) (<- n (r-call min (r-call dim d))) (<- idxs (r-call ppcommand "ppdense_makeRange" 1 (r-call + (r-call r-index (r-call dim d) 1) 1) (r-call + (r-call * (r-call - n 1) (r-call r-index (r-call dim d) 1)) n))) (if (r-call is.scalar value) (r-block (r-call ppcommand "ppdense_subsasgn_idx_s" d idxs value)) (if (r-call != (r-call length value) n) (r-block (r-call stop "diag<-: replacement diagonal has wrong length")) (r-block (r-call ppcommand "ppdense_subsasgn_idx" d idxs (r-call ppback (r-call as.2d value)))))) d) ())) (<- engine\Arg (function ((*named* arg *r-missing*)) (r-block (<- arg (r-call tolower arg)) (if (r-call != arg "") (r-block (if (r-call != arg "c") (r-call stop "unknown engine specified")))) (return arg)) ())) (<- pploadcenginemodule (function ((*named* filename *r-missing*) (*named* name "")) (r-block (<- res (r-call ppcommand "ppemode2_evaluate" "c" "ppevalc_builtin:load_module" 1 0 filename name)) (return (r-call r-aref (r-call ppcommand "ppemode2_getelement" (r-call r-index (r-call r-aref res 1) 1) 0) 2))) ())) (<- ppunloadcenginemodule (function ((*named* name *r-missing*)) (r-block (r-call ppcommand "ppemode2_evaluate" "c" "ppevalc_builtin:remove_module" 1 0 name) *r-true*) ())) (<- pploadpackage (function ((*named* filename *r-missing*) (*named* name "") (*named* engine "")) (r-block (<- engine (r-call engine\Arg engine)) (if (r-call == engine "c") (r-call pploadcenginemodule filename (*named* name name)) (r-block (<- out (r-call ppcommand "ppbase_loadUserPackage" filename name)) (if (r-call > (r-call length out) 1) (r-block (r-call warning (r-call r-index out 2)) (return (r-call r-index out 1)))) (return out)))) ())) (<- ppunloadpackage (function ((*named* name *r-missing*) (*named* engine "")) (r-block (<- engine (r-call engine\Arg engine)) (if (r-call == engine "c") (r-call ppunloadcenginemodule name) (r-call ppcommand "ppbase_removeUserPackage" name)) *r-true*) ())))